PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622484.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-X1
Protein Properties Length: 1122aa    MW: 121304 Da    PI: 8.1097
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622484.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.93.7e-07446463118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG H+Cq+ CH G+C pC
  XP_009622484.1 446 CGVHRCQAVCHSGDCAPC 463
                     ****************** PP

2zf-NF-X118.64.1e-06542560119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++lCH G CppC 
  XP_009622484.1 542 CGQHSCESLCHSGHCPPCL 560
                     ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.2E-7145216No hitNo description
PROSITE profilePS500168.831154215IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.48157213IPR001841Zinc finger, RING-type
PROSITE patternPS013590157212IPR019786Zinc finger, PHD-type, conserved site
CDDcd060084.72E-6246307No hitNo description
SMARTSM004380.023269287IPR000967Zinc finger, NF-X1-type
PfamPF014228.4271286IPR000967Zinc finger, NF-X1-type
CDDcd060084.10E-12314362No hitNo description
SMARTSM004380.018324343IPR000967Zinc finger, NF-X1-type
PfamPF014227.7E-4324341IPR000967Zinc finger, NF-X1-type
CDDcd060081.53E-8378423No hitNo description
SMARTSM004385.4E-4388407IPR000967Zinc finger, NF-X1-type
PfamPF014225.4E-4388405IPR000967Zinc finger, NF-X1-type
CDDcd060081.43E-13436484No hitNo description
SMARTSM004383.2E-5446465IPR000967Zinc finger, NF-X1-type
PfamPF014221.9E-6446463IPR000967Zinc finger, NF-X1-type
SMARTSM00438190504538IPR000967Zinc finger, NF-X1-type
PfamPF0142219504515IPR000967Zinc finger, NF-X1-type
CDDcd060084.53E-9532584No hitNo description
SMARTSM004382.0E-4542561IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4542559IPR000967Zinc finger, NF-X1-type
CDDcd060086.30E-5589637No hitNo description
SMARTSM004380.34599617IPR000967Zinc finger, NF-X1-type
SMARTSM004380.022652682IPR000967Zinc finger, NF-X1-type
PfamPF014225.6E-4652667IPR000967Zinc finger, NF-X1-type
CDDcd060084.59E-5680729No hitNo description
PfamPF014224.5684710IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021691712IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.4E-4931976IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1122 aa     Download sequence    Send to blast
MSFSSAQNNR RNNNSNRPRN TPVQSARREW VPRGSTATTT VSAAPVTTTV ITTVVSPVFN  60
LNGSSSAGNG REKDNVSVAP VNHRNQTYVG PNYDKGPAYA GRERGRDREN HNHQENRVER  120
AVNGRINQGE HKRLKDPNLP QLVQEIQEKL LKGNIECMIC YDMVRRSAPV WSCSSCYSIF  180
HLNCIKKWAR APTSVDTSAE KNQGFNWRCP GCQSVQLTSS KEIRYICFCG KRQDPPSDLY  240
LTPHSCGEPC GKKLEKELPG HDLSEEDLCP HVCVLQCHPG PCPPCKAFAP ARSCPCGKEV  300
ITTRCSDRKS VLTCGQQCGK LLDCGRHRCE QTCHVGPCGH CQVIVNAYCF CKKKTEVVLC  360
GDMGVKGDIE IEDGVFSCNS ACGRKLSCGN HVCLELCHPG PCGDCALLPS KVKTCCCGKT  420
SLEDERHSCL DPIPTCSKVC GKSLRCGVHR CQAVCHSGDC APCLVPVTQR CRCGSTSRTV  480
ECYKTQAEDE KFTCDRPCGQ KKNCGRHRCS ERCCPLSNPK NSVTGGWNPH FCSMPCEKKL  540
RCGQHSCESL CHSGHCPPCL ETIFTDLTCA CGRTSIPPPL PCGTPSPSCQ LPCSVPQPCG  600
HPPTHSCHFG DCLPCAVPVA KECVGGHVIL RNIPCGSKDI RCNKLCGKTR QCGLHACART  660
CHSSPCDFSA GPSNGSRASC GQTCGAPRRD CRHTCTALCH PSSPCPDVRC EFPVTITCSC  720
GRVSANVPCD AGGQIVDSVF EATIIHKLPS PLQPIEINGK KVPLGQRKLT CDDECAKMEK  780
KKVLSDAFGI TPPNLEALHF GDAAVSEVLG DLLRRDPKWV LSIEERCKCL VLGRSRGGVN  840
ALKVHVFCPM LKEKRDAVRL IAARWKLSVN AAGWEPKRFI TVHVTPKSKT PARILGAKGC  900
TVNNIAQPAV FDSLVDMDPR LVVALFDLPR DADISALVLR FGGECELVWL NDKNALAVFS  960
DPARAATAMR RLDQGSAYCG AAVVPQSGVA SAVASATNAW GVSGAAKDGG GAAALKGNPW  1020
KKAVVQEPHL RESPWDPEEW SKNPTDSAPS AWRTNEATPA ASSNRWSVLA PEMTSNFPRA  1080
SITIKEPVTE PGVGGSALPP KPQDVGVDEM ADVVDDWEKA YD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622484.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM1B4730.0M1B473_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000367740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1